Hi there,
I've run into this problem twice now, and I didn't see anything mentioned about it on the forums so I wanted to share.
When I import a control file from my desktop, and I go to delete it in TMoleX, I am prompted if I want to remove all of the files in the directory that my control file is. Unthinking, I have clicked yes and this has caused me to delete my entire desktop, including programs open on it. I have not been able to recover the files that were deleted. I wanted to post this as a word of caution, but if anyone has any suggestions on how to recover my files, I would be eternally grateful!