Hi,
if the negative frequency is small, it might be enough if you redo the optimization with tighter criteria. For NumForce it is often necessary to use at least jobex -gcart 4, often something like jobex -gcart 5 -energy 6 is required. Be sure to use high enough $scfconv, too (I suggest 8 ).
If more strict optimization won't help, it might be necessary to lower the symmetry. Use "screwer" tool to distort the structure towards the negative frequency. You will get new coordinates in $newcoord group of control file, redo the optimization using them. It can also be helpful to visualize the negative frequency with TmoleX or some other software.