Hi Kris,
if you go to the extapps\putty folder in your TmoleX installation directory (e.g. C:\Program Files\TmoleX2023\extapps\putty), you will find the two putty binaries:
pscp.exe
pssh.exe
That's what TmoleX is using to copy files to and from a remote machine (pscp.exe) and to start the Turbomole jobs (pssh.exe).
If you want to (or need to) replace the putty version that comes with TmoleX, just replace those two files with a putty version that works for you on your system.
Note that pssh.exe is identical to plink.exe, so just copy your plink.exe to that directory and rename it to pssh.exe
Hope that helps